Not exactly. It is the scale of industrialized agriculture in general which does that, primarily through its heavy reliance on fertilizers produced using natural gas as a feedstock. If corn is the worst offender, it's because it has certain properties that make it a desireable choice of crop -- particularly as a crop for export. Soybeans require less fertilizer than does corn (being a legume, the soybean is capable of nitrogen fixation), but because corn utilizes C4 carbon fixation, it requires less water. A lot less. (Efforts are under way to introduce C4 carbon fixation into soybeans; that would really be something). Soybeans contain more protein than corn, but corn has more sugar, and that counts big if you're interested in making ethanol. Even if you're able to see the futility in that exercise, corn still generally comes out on top due to its greater versatility for use in processed foods.
It's entirely possible to grow either crop without the use of chemical fertilizers, and you can even eliminate the petroleum used in the combines and all that, making them completely carbon neutral. You just can't do it at the same scale.