Source:
http://criminal.findlaw.com/criminal-charges/burglary-defenses.html
If someone is found by police in possession of stolen property, say an expensive computer or jewelry, that can be definitely identified as coming from a place that had been burglarized,
I have agreed that
if that person can show that he has a defense, such as an alibi or proof that he acquired the stolen property in a legitimate transaction, that person would not be likely, or should not be, charged with burglary.
If the individual does not have that clear defense, the prosecutor may well bring charges for burglary. Then it would be a matter for the jury to consider, if the person denied acquiring the property through burglary. If the jury did not convict for burglary, there would be likely be a conviction on the additional charge of possession of stolen goods, unless there is a good defense for that as well. The indictment is likely to include both charges.
Consider a different crime - bank robbery. The robbers wear masks, etc. and are not easily identified. However, the cash taken had been marked with fluorescent dye, visible under UV. A person is later found in possession of a quantity of such cash, and dye on his hands. How likely is that person to be charged, or convicted of bank robbery? It all depends, obviously, on whether he could reasonably have received the cash without having been involved in the robbery. Time could be an important factor: ten minutes or one hour after the robbery (the money is unlikely to have circulated) v. 10 days later (when the money would have circulated, perhaps). (I am assuming that the dye could persist on the cash for 10 days.)