I also remember the Warren Commissions guess as to the order of shots (hit, miss, hit - if I recall correctly), did tighten the time frame for the shots. The later analysis of miss, hit, hit made more sense. I may have this bit all wrong, but that is what my memory is telling me - if I am wrong please let me know.
You're wrong, but it's not your fault.
The Warren Commission, having access to films that had no sound, and the autopsy report, was able to determine there were two shots that struck the President. They determined the shot that first shot the President went on to cause all the Governor's wounds (which may or not have been the first shot fired).
They also knew that most of the witnesses remembered three shots, no more, no less.
That implies one miss. They didn't know whether the miss was the first shot fired, the second shot fired, or the third shot fired. And they said that in a portion of Chapter Three called The Shot That Missed.
You can read it here:
http://www.archives.gov/research/jfk/warren-commission-report/chapter-3.html#missed
They gave both pros and cons for each possibility, but never decided which shot missed.
But like I said, it's not your fault. That's because the first shot miss or the last shot miss by Oswald aren't easy to rebut, because they each allow Oswald eight or nine - or more - seconds to fire three shots (and the clock starts with the first shot, so it's really eight or nine - or more - seconds to fire TWO more shots).
So the conspiracy theorist book authors cheat, and quickly dismiss or totally ignore the other two scenarios, and only rebut the easiest scenario to rebut, the scenario with a second shot miss (which allows only 5.6 seconds to fire three shots). They pretend that's the scenario the Warren Commission decided up, but if you read the above, you'll see that's not true.
And that's the only reason why you think the Warren Commission decided on the second shot miss, because it was the easiest for the conspiracy theorist book authors to argue against, and only for that reason.
Hank