Chromosomes have been known to break into smaller chromosomes or fuse into bigger ones, and those changes have been known to stick in separate lineages, which is why it's possible for different mammal species to have different chromosome counts after having descended from the original mammal common ancestor. A species in which one of those transitions in chromosome count is still underway will consist of some individuals with different chromosome counts.
For example, domesticated horses have 64 chromosomes apiece (32 pairs), and their wild counterpart, Przewalski horses, have 66 (33 pairs), and they're perfectly interfertile. Their offspring have 65 chromosomes: the 31 pairs that both "species" have in common, and single chromosomes apiece from each of the other leftover pairs that only one parent had (1 from the domesticated parent, 2 from the Przewalski parent). That leftover chromosome in the domesticated horse corresponds with both of the leftover chromosomes in the Przewalski horse, containing the equivalent genes in the same order, with the two Przewalski chromosomes in a single line end-to-end. During mitosis in the offspring's cells, the two lone Przewalski chromosomes even physically line up end-to-end next to the single longer chromosome from the domesticated parent.
Nobody knows whether this situation resulted from the long chromosome breaking apart in Przewalski ancestors or the two shorter ones fusing in the domesticated population's ancestors. But, whichever population the change happened in, it must have experienced a stage in which there were individuals with three different basic chromosome layouts:
- 64, producing gametes with 32
- 66, producing gametes with 33
- 65, producing gametes of both kinds
And, taking both together as a single population living today, that is still the current situation.
Similarly, humans have a single chromosome pair corresponding to two chromosomes pairs in other living great apes. We can tell that it got that way by fusion of two in our ancestors who had had 24 pairs til then, not only because the 24-pair arrangement is common to other living great apes, but also because a degraded form of the caps that normally go on the ends of chromosomes is still stuck in the middle of it. So, at some point in the last few million years, our ancestral population consisted of a mix of individuals with 46, 47, or 48 chromosomes, producing either 23-chromosome gametes, 24-chromosome gametes, or a mix of 23-chromosome and 24-chromosome gametes.