The upper sections of the Twin Towers do not decelerate when they encounter undamaged structure.
We're still waiting for you to provide some numbers to back up this assertion.
Now, let's see how much deceleration we might expect.
The downward acceleration of the upper block was measured at something around 2/3g, so we're seeing a retarding force of about 1/3mg. However, there are two major causes for retardation of the upper block, namely conservation of momentum due to acceleration of stationary components of the lower block, and structural resistance. Clearly, damage to the lower block will have a negligible effect on the first component, because the mass is not affected; columns have been weakened or broken, but only an insignificant part of the mass has fallen away. So we need to know what proportion of the 1/3g retarding force is due to structural resistance. Referring to Frank Greening's work at
http://www.911myths.com/WTCREPORT.pdf, an estimate of retardation times gives 2.4 seconds for momentum conservation and 0.2 seconds for WTC1, indicating that momentum conservation is in fact the dominant term.
Let's assume that the structural resistance is about 10% of the overall retardation. So now we need to know by how much that was reduced in the damaged part of the building. NIST estimates that about 10-15% of the core column strength was removed by the airliner impacts, and we know that something like half a set of perimeter colums was also severed on the impact face. Overall, a figure of 15% looks like a reasonable one for the weakening of the damaged section.
So let's multiply all that together to get an idea of the reduction in retardation we'd expect. 0.33 x 0.1 x 0.15 = 0.005. So, as a result of the damage to the structure, we expect the downward acceleration to reduce from 0.667g to 0.662g - less than a 1% decrease in acceleration.
Simply put, tempesta29, the effect you're looking for is too small to see. I've analysed the data you're referring to, and the error in acceleration values is close to ±100%. Claiming, on the basis of data that noisy, that you're failing to see a 1% step change in acceleration is like claiming Islam is a false religion because when you look east you can't see Mecca.
Dave