While I realize that, just because I initiated this thread, I don't have any right to control it, I wonder if we could get back to the question I posed in the OP. One fairly reasonable answer to the question of why an intelligent designer would use mass extinctions is that said designer, while intelligent, is far from perfect. Of course, another is that there is no ID. Does anyone have any other ideas?
Another idea is that our perception of the designer's methods is skewed, and what we perceive as imperfection is actually just unwarranted unfulfilled expectations based on things like how we would approach a similar task.
As an analogy, consider a binary digital counter that is set to slowly count upward, starting from 0000 0000 0000 0000. As it correctly operates, it will eventually reach 0011 1111 1111 1111. At the next tick, it then continues to 0100 0000 0000 0000.
An observer who lacked a complete understanding of the meaning of binary counting, who instead perceives the purpose of the counter being to gradually accumulate an increasing quantity of 1's, might see that event as at least a large and unnecessary setback, if not an outright error or design flaw. So many hard-earned 1's, gone in an instant. A mass extinction of 1's! But the counter (or the engineer who designed the counter) doesn't care; it only added one, just like always, and the binary value of the count increased by one, just like always.
When we think about genius in a human designer, we look for things like the ability to make great intuitive leaps forward beyond existing examples; to mentally conceive things very different from what already exists, and then realize them. The archetypes (who still fall short of this ideal) are people like Benjamin Franklin or Leonardo da Vinci, or fictional characters like Captain Nemo or Tony Stark. By contrast, any humdrum engineer can invent minor tweaks to parts of existing things, especially if we don't expect most of them to work when tested. (However, we don't exactly condemn iteration and trial and error either; no one calls Edison an idiot because he had to try hundreds of different materials for light bulb filaments to find one that worked.)
So, if we envision the ultimate creator, we tend to envision the extreme of great intuitive leaps forward: creating everything, out of nothing (not meaning using no raw materials, but rather, creating things whose like has never existed before), instantly.
But what if instead of the "ultimate da Vinci," we consider the "ultimate Edison" instead? A designer who works with no plan, intention, or forethought, but instead, constantly makes every possible small variation in everything that already exists, and then sifts out the results? We have a hard time seeing that as genius or even intelligence (even though the supposed intuitive leaper is probably doing something similar, mentally inventing many variations and then rejecting the ones that don't suit; we see what finally goes down on paper as one big intuitive leap because that mental process is veiled). But if we get over that prejudice, we can see that evolution itself is a lot like our hypothetical "ultimate Edison," and is itself an intelligent designer.
If we veil the process, it's hard to tell the difference between an ultimate da Vinci and an ultimate Edison from the results alone. I'm not sure what would constitute perfection or imperfection in the latter.
Respectfully,
Myriad
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