No. Standard engineering practice requires omission of some elements sometimes. You should know that by now. Let me quote a few examples:
Break elements were used on the east side of Floors 7 to 14, where the fires were dominant prior to collapse. Including break elements at every connection location on these floors would have greatly increased the model size and affected the rate of solution convergence. Since the collapse of WTC 7 clearly initiated on the east side of the structure (Chapters 5 and 8), the break elements were only used in the east side of the model.
(NCSTAR 1-9 pp. 457-458)
A procedure was developed for addressing buckled and/or failed components so that any member that did not structurally contribute to the response of the building was removed from the analysis to improve computational efficiency and avoid convergence problems. This procedure was used to modify the model at the end of each 30 min interval, or as necessary when the analysis halted due to non-convergence.
(op.cit. p.487)
In the ANSYS analysis, buckling of flexural members led to convergence difficulties. To improve analysis progress, buckled members were removed from the analysis.
(op.cit. p.487, bottom)
It's up to you to prove that the intent was nefarious. So far NIST has done well justifying their omission: it was not a failure mode contemplated in the model.