Depends on the paleontologist. I'm square between biology and stratigraphy (well, ecology and stratigraphy), but I've known a number of very good paleontologists that came at it from a biological (usually anatomical) perspective.
In general, I tend to view any cladogram that doesn't include fossil data as an untested hypothesis (or a minimally tested hypothesis), mostly because of the nature of the data. A cladogram says "These two things share a common ancestor, which had these traits". The "common ancestor" part is a testalbe hypothesis in paleontology. And as far as ecology goes, I've heard a lot of good arguments--from chemical to dental to anotomical--that our understanding of ecology is based on systems under a great deal of stress. Simply put, we've never studied an ecosystem that wasn't heavily impacted by humans. Makes me skeptical about any claims about ecological principles derived from a modern dataset. But paleontologists pretty much by definition deal with ecosystems that aren't impacted by humans--only Quaternary paleontologists deal with systems that could potentially be so impacted, and those guys are only barely considered paleontologists.
In general, I tend to view any cladogram that doesn't include fossil data as an untested hypothesis (or a minimally tested hypothesis), mostly because of the nature of the data. A cladogram says "These two things share a common ancestor, which had these traits". The "common ancestor" part is a testalbe hypothesis in paleontology. And as far as ecology goes, I've heard a lot of good arguments--from chemical to dental to anotomical--that our understanding of ecology is based on systems under a great deal of stress. Simply put, we've never studied an ecosystem that wasn't heavily impacted by humans. Makes me skeptical about any claims about ecological principles derived from a modern dataset. But paleontologists pretty much by definition deal with ecosystems that aren't impacted by humans--only Quaternary paleontologists deal with systems that could potentially be so impacted, and those guys are only barely considered paleontologists.