-Doctors rely on the prevailing wisdom and articles in medical journals.
They also rely on the FDA-approval process and post-marketing surveillance. The FDA had access to the studies even if they were not all published in medical journals. Regardless of what is published, the uses for which a particular drug is approved will have evidence backing that use.
-The medical journals are publishing a higher percentage of studies of trials which seem to show that antidepressants are effective, than studies which show them to be ineffective.
That really only influences the perception of overall effectiveness. And from a practical point-of-view, the absolute effectiveness of a medication doesn't really matter when it comes to prescribing for an individual. You don't really expect an identical response to what was found in an RCT, as an RCT represents a somewhat contrived situation. You just need to know about relative responses - whether it's likely to have a response better than placebo or other anti-depressants, and in what conditions (mild vs. moderate vs. severe depression, for example). Publication bias becomes more relevant when you are talking about off-label uses.
-These are not new drugs we are discussing. They are the antidepressants already sold under the names Paxil, Zoloft, etc.
Yes, but it includes the information that went in to deciding whether or not the drugs were approved - i.e. at the time of the studies they were new drugs.
-There are at least 4 areas of concern with SSRI's--sexual dysfunction, withdrawal symptoms, overall effectiveness compared to other options, long-term effects (and long-term effectiveness). There are others as well.
Suicidality, akathisia.
-For these areas of concern, the drug companies somehow didn't study them, or exaggerated the benefits and downplayed the risks. The studies were short-term. I have read of various methods the drug companies used to slant their data. (This is subtle stuff for me--so I don't recall all the details--but I've read about this quite a number of times.)
-example: Withdrawal symptoms were at first written off as the return of depression. Sexual dysfunction was blamed on depression--or supposedly could be treated with other drugs (!)
To be fair, that is the point of post-marketing surveillance. It is difficult to discover these effects before there is widespread use of the drug. Side-effects are looked for in Phase I, II, and III trials, but to rule-out uncommon effects or to thoroughly discover the effects of long-term use would be prohibitively expensive and time-consuming. It's a balance between making useful drugs available and ensuring they are as safe as possible.
And regardless of whether drug companies try to suppress the information, the process is too transparent, and too many other people, like physicians, are aware of the information, for it not to become public knowledge.
-Ought reports that SSRI's are ineffective be considered less interesting than those saying that they are effective? I don't understand.
I think Blutoski answered this question well, already. Unless the information is likely to change practice, it's not particularly interesting regardless of whether it's positive or negative.
Whether this is publication bias or "File-drawering", isn't this important evidence that doctors have received skewed information?
Someone more knowledgeable than me, please confirm or explain why not.
Doctors generally assume that they are receiving skewed information, though. This is sort of a formal confirmation of already established suspicions. There tends to be an ongoing re-evaluation of drugs over time, sometimes even over-turning prior practice. That this kind of information comes to light shows that the system is working.
Linda