There are apparently a few exceptions regarding the self-weights in SAP2000 and the concrete. The self-weights in SAP2000 apparently took into account some of the non-frame loads on selected floors such as those associated with the mechanical floors. The self-weights also took into account some of the load associated with the roof and the antenna tower on WTC1.
Looking at the SAP2000 self-weight table in terms of section properties for WTC2 shows that the area load includes some of the load on stories 3, 4, 5, 6, 7, 9, 41 ,42, 43, 75, 76, 77, 107, 108, 109, 110, and the roof. The non-frame mass on all the other stories was taken into account by tacking it to columns as concentrated loads. Those loads appear in a separate load table in SAP2000.
The area loads by object type in the SAP2000 self-weight table for WTC2 have the names CONC and CONC3835, which apparently refers to concrete. The number 3835 in the table may be referring to the compressive strength of the concrete. Only Floors 7 and 107 have the number 3835, which apparently used a different strength of concrete.
Here are screen captures of the last part of the self-weight table by section property in SAP2000 for WTC1 and WTC2. There are 3093 rows in the table for WTC2 accounting for all the different components in the tower. NIST and LERA did an extensive accounting of all the mass in the towers.
WTC1:
WTC2: