Every freshman in my genetics class used the test repeatedly. They didn't seem to have any problem with the concept of expected frequencies,
i am not sure how to interpret this as evidence (for or against

) but reading the link you kindly provided
http://www.colby.edu/biology/BI17x/freq.html we find:
In this example, our null hypothesis is that the coin should be equally likely to land head-up or tails-up every time. The null hypothesis allows us to state expected frequencies. For 200 tosses, we would expect 100 heads and 100 tails.
this is a clear definition of the null, but i would not say "we would expect 100 heads and 100 tails.", in fact i would bet you this will not be the result. and i'd offer 2:1 odds. care to take that wager?
http://www.colby.edu/biology/BI17x/freq.html Using probability theory, statisticians have devised a way to determine if a frequency distribution differs from the expected distribution. To use this chi-square test, we first have to calculate chi-squared.
technically this is already askew, as we never "determine if a frequency distribution differs from the expected distribution". firstly the "expected" was a number and is now said to be a distribution, secondly the best one can ever do it look for consistency, or the lack there of: the probability of some previously specified statistics given the particular obs and the stated null. (admittedly the first might be a pedagogical nitpick, but the second is a fairly fundamental violation of the lessons of Statistics 101.)
http://www.colby.edu/biology/BI17x/freq.html Because the chi-squared value we obtained in the coin example is greater than 0.05 (0.27 to be precise), we accept the null hypothesis as true and conclude that our coin is fair.
one would never
ever "accept the null hypothesis as true". neither frequentist nor bayesian.
one either rejects the null, or one fails to reject the null. would you really believe a coin was fair after three flips?
if you know who wrote this page, and s\he would like to discuss improving it with a statistician, i can happily arrange for that to happen if you send me their email via PM.
I'm simply using the chi-square test to prove the validity of the concept of expected frequency (which many people in these kinds of threads are invariably in ignorance and/or denial about), and to provide an example of how expected frequencies may be compared to observed results to test hypotheses.
OK: we agree that a given null will assign probabilities to all outcomes allowed by the null. here we agree.
I'm simply pointing out that the expected frequency of an observation does not become void after the observation.
that is true: but the expected frequency (sic) is a property of the null, not a property of the system being studied. it is P(X=x|null is true)
and the probability of the observations before it is made... well as i do not believe the null is true i do not know how to estimate that... once i do, then that becomes my prior on that observation.
and the probability of a observation after the observation has been taken? well P(X=x | X=x) = 1
Not if the hypothesis from which the expected frequency was derived is true.
it does not matter if the null is true or false. P(X=x|null is true) remains the same...
The hypothesis determines the value of the expected frequency. The expected frequency does not change depending on when it is calculated, or what is observed. The expected frequency is fixed by the hypothesis.
agreed.
The only thing that changes is your belief in the hypothesis, if the observations fail to align sufficiently with the calculated expectations.
well, not quite the only thin: what also changes is that the observation now has been made, and the probability of the observation being what is goes to one.
so if the observation is "you exist", and you are making an argument about your existence, then the probability you exist is equal to one. agreed?
this is a special case where in order to make an argument about your existence, you are already in the case Prob(you exist) = 1.