1. Why is it that photons do not interact with the Higgs field? That is, what is the mechanism which causes other particles to interact with the Higgs, thus creating mass, whereas photons lack this mechanism?
See my post
here. The Higgs mechanism is a fundamental part of symmetry breaking of the electroweak force. Above the critical energy, all electroweak gauge particles are massless. Below the critical energy, the standard model without the Higgs mechanism would predict that they remain massless. With the Higgs mechanism added you get extra symmetry breaking that results in a variety of gauge bosons with different masses - photons, W
+/- and Z. There isn't a mechanism added that the photon lacks, the mechanism added is a fundamental part of what makes a photon a photon.
2. How does gravity fit into the Higgs? If the Higgs is responsible for giving particles mass, and gravitational forces act upon mass, is there some kind of tie in or connection between the Higgs field and gravity fields? (I'm particularly interested in this one)
No. The standard model still says nothing whatsoever about gravity when the Higgs mechanism is added to it.
3. What about dark energy? The Higgs field apparently penetrates all of the universe, because we observe all particles in the universe, no matter their location, to have mass (say, via gravitational interaction). And apparently dark energy, whatever it is, also permeates all of the universe; is there a connection between the two?
No.
All fields penetrate all of the universe, there's nothing special about the Higgs field there. Dark energy is one area the standard model struggles with, and the Higgs doesn't help it there. Or at least, it hasn't so far.
4. Can the discovery of the Higgs help in the search for dark matter particles? Since we know dark matter interacts gravitationally, then it must have mass, and if it must have mass there should be some kind of relationship to the Higgs field.
The standard model completely fails where dark matter is concerned. It just doesn't predict it exists at all.
Ultimately the answer to all these questions is likely the same thing - the Higgs mechanism does not only exist as part of the standard model. The SM predicts a very specific Higgs particle, and it's entirely possible, likely even, that the one we've seen is not, in fact, the particle predicted by the SM. It's therefore hopeful that whatever theory the new particle
does fit will also do better at explaining all these other points as well. Especially since they're a large part of the reason all the alternative theories exist in the first place.