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Wholly Natrualistic Alternative To Neo-Darwinism?

Antoher thing that I want to point out: You're talking about relatively minor changes.

A wing isn't that much different from an arm. It's got the humerous, the ulna and radius are fused but present, the metacarples are there, the carples, even the philangies. It's a vertebrate limb. In chickens it's somewhat hard to see, but in bats it's perfetly clear it's just a limb. Same with pterosaurs and the other flying lizards of the Mesozoic. Similarly, lungs aren't that major of a change--they're a modification of a swim bladder, which most fish have. They're relatively minor changes, mere tinkering with the machinery that the organisms already had.

That's not to say that anything in evolution is otherwise, but you're focused entirely on vertebrates, Patrick1000.

Here's a question for you: Why do clams not have heads? I haven't dug through the recent changes in mollusk taxonomy, but the rest of mollusks have heads. In fact, that's the only example I know of an organism loosing the chepalization trait. This is a MAJOR shift--cephalization is far more improtant than, say, the shape of your limb, as it impacts how you interact with the world around you in a fundamental way. What could possibly have happened to cause that?!

More fundamentally, it must be remembered that the original animals didn't excrete mineralized skeletons. That's something paleontologists are really confused about. Sure, it's probably something to do with the ion pumps we already have (or flagella....everything seems to come back to flagella...), but why did that suddenly happen 540 million years ago?

Or, how did the different bauplans arise? Valentine's work is good, but many, many mysteries remain on that fundamental question.

Why are there three fuanas? ARE there three faunas? Are there four? Are they merely the artifact of various collection biases? Do we have enough data to tell? How would we know the answers to any of these question?

If you want to get into pure abstract evolutionary theory, what causes chanalization? I have my own opinions, but that's all they are--really, we don't know very much about the process. On a related note, what causes the radiation events in Punctuated Equilibrium? Reduced selection pressure can't be the only answer, it seems.

The very questions you raise, Patrick1000, indicate how little you've explored this question. These questions I've presented are relatively common quesitons in paleontological circles, and not uncommon in biological ones. They're also much, much greater challanges to evolutionary theory, as it currently stands, than a wing is. Like I said, a wing is just a minor adaptation of the terrestrial vertebrate limb. It's nothing, evolutionarilly speaking, compared to, say, shells or feathers. Yet you continue to harp on it. I suspect it's because you simply don't KNOW anything else--you know terrestrial vertebrates (the "higher animals"), and that's it. Not necessarily a bad thing--I know a number of scientists who specialize in them, and who make serious contributions to science in their studies--but you have to learn not to pretend that your area of interest represents all of the science in question. Otherwise, you end up looking like a fool.
 
How many mutations would it take to make a pair of wings from lizard arms? And each of those is going to occur by chance? And what environmental pressure will press these changes into existence/maintenance and drive the dynamic of wing formation forward?

Do you have the same difficulty grasping the evolution of gliding possums? flying squirrels? bats?

We know some dinosaurs were warm-blooded, we know that some had proto feathers, and some even had feathers that look almost modern. Some had feathered forelimbs and hind limbs, some had beaks, etc. We know some therapods developed to a skeletal structure strikingly similar to a modern bird's. Most of the features you seem so incredulous of in the evolution of birds from therapod dinosaurs were already recognisably present in the dinosaurs.
 
The fossil record may well support the notion of common ancestry....


The fossil record may well support the notion of common ancestry...., as does homology past and present. But this is not what is at issue.

Again, you are arguing as though my point is there is no such thing as evolution. The fossil record supports that, SO????????? I agree.

The fossil record does not provide for ANY evidence whatsoever as to the validity of the evolutionary mechanism as conventionally presented.

Take a look at the biology textbook example I gave above. Those are the mechanism(s) cited by evolutionary biologists as driving the evolutionary dynamic. How does the fossil record support that model? It doesn't contradict it, but so what? That is no help when we are looking for evidence.

The fossil record is like the commonality of the genetic code. It lends support to the notion of common ancestry and does absolutely nothing to buoy up, provide evidence for, evolution's mechanism, a' la that presented in the textbook referenced above, or any other textbook you care to name and review.
 
Why are you so hung up on flying?
The ability to fly has evolved seperately several times.
Now if each flyer were to use the exact same mechanism and shape then maybe there'd be some point in being incredulous about its appearance.
But insect flight is different from bird flight, which is different from mammalian flight (though that and the flying dinosaurs seem to have some elements in common).
Furthermore I can think of two species at the top of my hat that are on the verge of becoming full flyers.
Flying squirrels need only to gain mutations elongating their forelimbs (which, looking at dogs is easy to do) to be able to go from gliding to flying.
Flying fish would need to evolve a working set of lungs, but fish have done this before.
Of course there would need to be a selective pressure for this to become dominant, but flight is nowhere near the major leap you seem to feel it is.
 
Similarly, lungs aren't that major of a change--they're a modification of a swim bladder, which most fish have. They're


I'm reading Brian Switek's Written in Stone at the moment, and there's a suggestion there (p. 85) that the swim bladder is a specialisation in modern fish developed from lungs.
 
Patrick1000 said:
Take a look at the biology textbook example I gave above. Those are the mechanism(s) cited by evolutionary biologists as driving the evolutionary dynamic. How does the fossil record support that model?
It shows us which specific traits changed, and therefore which genes to look at. This is obvious if you give the matter five seconds' worth of thought, and Jack Horner (to re-state it yet again) is actually testing this idea as we speak. Far as I know, the results are very promising.

Patrick1000 said:
The fossil record is like the commonality of the genetic code. It lends support to the notion of common ancestry and does absolutely nothing to buoy up, provide evidence for, evolution's mechanism, a' la that presented in the textbook referenced above, or any other textbook you care to name and review.
How much you want to bet on that?

Here's the thing, Patrick1000--we're never going to find genetic fossils showing the entire evolutionary pathway. It's probably not possible--taphonomy and diagenesis do nasty, nasty things to unstable chemicals like DNA. However, only a moron would demand we do so. We can find all kinds of indirect evidence to support the idea, after all. You asked about what selection pressure would lead to flight--that's paleoecology. You asked what advantages there would be--again, paleoecology. We can estimate the selection pressures organisms are under, and use that to figure out how it evolved. Once we know what changed, we can look at DNA of modern relatives (if such exist) and figure out which genes are involved.

Oh, and we know that while selection pressure CAN be neutral, it's not NECESSARILY neutral. So again, your whole "And each of those is going to occur by chance" hang-up is completely erronious.

ETA:
Mojo said:
I'm reading Brian Switek's Written in Stone at the moment, and there's a suggestion there (p. 85) that the swim bladder is a specialisation in modern fish developed from lungs.
Interesting. Not sure I buy it, but that's because I think of lungs as a lobe-finned fish trait, and swim bladders are in ray-finned fish (ancestors to the lobe-finned fishes). I could very well be wrong. Definitely something worth looking into. Thanks. :)
 
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The fossil record may well support the notion of common ancestry...., as does homology past and present. But this is not what is at issue.

Again, you are arguing as though my point is there is no such thing as evolution. The fossil record supports that, SO????????? I agree.

The fossil record does not provide for ANY evidence whatsoever as to the validity of the evolutionary mechanism as conventionally presented.

Take a look at the biology textbook example I gave above. Those are the mechanism(s) cited by evolutionary biologists as driving the evolutionary dynamic. How does the fossil record support that model? It doesn't contradict it, but so what? That is no help when we are looking for evidence.

The fossil record is like the commonality of the genetic code. It lends support to the notion of common ancestry and does absolutely nothing to buoy up, provide evidence for, evolution's mechanism, a' la that presented in the textbook referenced above, or any other textbook you care to name and review.

You say - "I don't believe in Evolution by Natural Selection so something else must be at work". Responders here have said -- "Small random genetic changes, selected for over long periods of time account for what we see in the World today. Nothing else is required".

If you really want to understand, try reading Understanding Evolution.

Understanding Evolution is a non-commercial, education website, teaching the science and history of evolutionary biology. This site is here to help you understand what evolution is, how it works, how it factors into your life, how research in evolutionary biology is performed, and how ideas in this area have changed over time.

Credits: This site is a collaborative project of the University of California Museum of Paleontology and the National Center for Science Education.

Start here, to see the history and support for speciation in particular:

http://evolution.berkeley.edu/evolibrary/article/0_0_0/history_18

:th:
 
My wife and I were talking about the UCMP the other day. She was looking for sites on Earth Science for her class, and I recommended them. They have a database that I use all the time for paleontological resource inventory reviews--so it's a site that's geared towards EVERY level of research, from a little kid going "I like dinosaurs!" to an emeritus professor asking "What's the stratigraphic range of Dinohippus? What's its ecological range?"
 
No, see, an emeritus professor would say "I like sauropodomorphs." ;)
 
Look at the list of things, per our book's authors, which bring about a change in the genetic code, the biologic information, the structure and function of any given animal as I listed the factors above, 1 through 5. Let's take number one off the table, mutation. Let's eliminate that momentarily as an option. Do you see any way that a reptile can become a bird; warm blooded, grow wings, develop a fully divided 4 chambered heart, develop a system of unidirectional air flow through the lung by way of meiotic crossing over, meiotic random division of chromosomes, fertilization, loss/doubling/transposing of chromosomes' genetic material. Of course not! One could randomly shuffle shuffle shuffle this stuff, mix and match, lose, double and transpose by chance all one likes, and a reptile won't become a bird with these options available driving the dynamic of change. Actually, you'll wind up with a heck of a mess. And!, there would be nothing new, nothing new enough anyway, created just by shuffling more or less. A reptile to bird change requires more creativity and more "intention" in a sense one would think. How could it be otherwise?
IIt's already been explained to you 1) where the genes that did this are located, and 2) that reptiles had Avian hearts (dinosaurs did).

Furthermore, you're doing the typical Creationist trick of assuming that it's all or nothing--that it all happens at once, or none of it does. It actually happens over a long, long time. Minor changes accumulate, giving the appearence of a major change. Typically you see multiple minor changes in the same lineage. For example, there were many types of feathers in dinosaurs, only one of which became bird feathers. These accumulate sequentially--one mutation is either good, neutral, or not bad enough to kill the animal, so it sticks around. Another sticks around in that same lineage. Then another. This takes a long time, often millions of years, but fortunately, through paleontology, we can see those changes occurring over time. Reptiles didn't experience a genetic jumble and magically become birds, as you suggest.

Again, your arguments bear a striking number of similarities to Creationist arguments. The only question in my mind is how homologous they are, and how much is convergence?
 
But changes to make say a wing, or a lung with unidirectional air flow....seem to need to be "directed" for want of a better term.

First of all, why would flying be advantageous to begin with? In retrospect we say this, that, and the other thing. But there is nothing inherently advantageous about flying.

How many mutations would it take to make a pair of wings from lizard arms? And each of those is going to occur by chance? And what environmental pressure will press these changes into existence/maintenance and drive the dynamic of wing formation forward?

Based on the mechanism as now understood/viewed, the whole thing is too absurd, preposterous really. How could we ever have had entertained such nonsense as a possible solution for more than a moment's TIME?

It's directed by natural selection. Wings even for a lizard provide gliding, aid jumping, opening new niches up to lizards; this is part of natural selection. I have no idea why it is considered absurd, and if your arguments are any indication...YOU have no idea why they're absurd either, you just don't want to subscribe to the theory. I can't imagine why...

The environmental pressure is survival to reproduce, which is fitness. Increasing fitness is all that matters. Environmental changes affect the "new" fitness and organisms adapt to become more fit; this is why nylon eating bacteria and warfarin resistant rats make sense. Over a long scale you get whole system evolution. It's not all that hard to understand so I consider you to just refuse it outright due to ignorance.

They occur through genetic change, which isn't really "chance" because that would imply it's random; it's dictated through biochemistry, which is NOT AT ALL random.
 
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We can only answer such questions for a limited number of genes. This is why I brought up the cytochrome c protein example. In the case of that protein, the mutations which give rise to its different forms appear to be neutral and not affected by selection pressure. The mutations occur regularly like a clock ticking away, hence the name, "molecular clock".

Except in the case of cytochrome c, changes will not generally be nuetral, and therefore will not be retained. As Dinwar pointed , that is why in fact that cytochrome c does not act as a molecular clock. Why do you do that Patrick1000? You ignored that point and in fact you brought up the fact that cytochrome c is pretty much the same and does not display a molecular clock effect. That is because changes to cytochrome c are not nuetral or beneficial to reproduction.

So I take it that you won't answer those specific questions? They are truly important, why aren't you willing to answer them?
 
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But changes to make say a wing, or a lung with unidirectional air flow....seem to need to be "directed" for want of a better term.
What do you think that the fact that reproductive success determines the number of traits passed on to future generations is called 'natural selection'.

Why do you have hypothesize another ‘direction’?

What do you think differential rates of reproductive success are?
First of all, why would flying be advantageous to begin with?
It wasn't, you are engaging in determinism, have you even read Gould. the traits which may lead to alter trait are blind to the future, other traits were selected for or retained prior to the advent of flight.

How much modern evolutionary theory have you read?
In retrospect we say this, that, and the other thing. But there is nothing inherently advantageous about flying.
Wow, it depends. spiders use ballooning to disperse to other areas.

How many mutations would it take to make a pair of wings from lizard arms? And each of those is going to occur by chance?
No each trait might occur by change or through variation in the existing genome, but then there is selection

So Why doesn't a chihuahua look like great dane? They are the same species after all.
 
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The fossil record does not provide for ANY evidence whatsoever as to the validity of the evolutionary mechanism as conventionally presented.


If you don't want us to say strawman, then please present your sources for this alleged conventional view. And the quotes please....
 
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Patrick,
I too am amazed at the process. I'd like to share one way it "fits" into my head.

We accept that point mutations can cause changes in bacteria. From the bacteria's point of view, these are major, life-altering changes. But from our point of view, it's still just a blob on a slide. So it's easy to think that changes in a bacterium aren't really very dramatic or going anywhere interesting.

Then, I remember that I was once a single cell. That single cell and its DNA was then multiplied until you have me sitting here. Logically, a small, point mutation in that original cell could lead to important differences in the larger being.

Looking for an example, I find dwarfism. Achondroplasia accounts for some 70 - 80% of dwarfism (of which there are some 200 different causes). Achondroplasia comes about because of a difference in the fibroblast growth receptor 3. This amazing protein is huge, but a single mutation (either of two mutations will do it) replaces a glycine with an arginine. "Specifically, the amino acid glycine is replaced with the amino acid arginine at protein position 380" link: http://ghr.nlm.nih.gov/gene/FGFR3

So, from that I know that very small, random changes can have very large final results. That, at least, needs to be in the mix when I think about the reptile to bird thing.

The other ingredient is time. Huge time. The kind of time that takes a stream to a river to the Grand Canyon. Here is your hot air balloon. Only now, it's taking a small trickle of water, pulled by gravity, and flying to one of the most dramatic natural features on the planet.

Saying that dwarfism explains speciation is false. But it does illustrate a couple of interesting things. The first is that very small differences in a genome can mean very big differences in what we see. The second is that the process entire is extremely complex and the chemical details are not visible to us and were not preserved over geologic time.

Is there a genetic "switch" that gets a different kind of heart? Could be, I don't know. Does there have to be a series of immeasurably small switches? Could be, I don't know. Maybe there's a combination. The point is that variation can, and does, leap to some very strange and new places -- and that's all that's really needed isn't it?
 
If you don't want us to say strawman, then please present your sources for this alleged conventional view. And the quotes please....
I second this. Every paleontologist I've spoken to (and considering my job, that's a pretty substantial number) fully agrees that paleontology does in fact offer evidence for how evolution occurs. In fact, punctuated equilibrium is a theory on how evolution occurs--the majority of the time, organisms are well-adapted to their environments, and most mutations are detrimental. That's discussing the differential survival of randomly varying traits right there--in other words, the fossil record provided direct evidence for the conventional biochemical mechanism of evolution.
 
Interesting. Not sure I buy it, but that's because I think of lungs as a lobe-finned fish trait, and swim bladders are in ray-finned fish (ancestors to the lobe-finned fishes). I could very well be wrong. Definitely something worth looking into. Thanks. :)


He's talking about Acanthostega having both lungs and gills being "not altogether surprising. The most archaic forms of living bony fish, including lungfish, have both." He then goes on to say that this is essential to fish that live in waterways where oxygen can become depleted, and that rather than this being a development leading to early tetrapods, it might be a feature of ancient fish.

In the next paragraph he says that though most bony fish do not have lungs, they have "modified lungs in the form of a swim bladder", and that the swim bladder is "a derived specialization that evolved long after the first tetrapods appeared".

The source given for this is an essay by Stephen Jay Gould ("Full of Hot Air", in Eight Little Piggies).
 
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Huh. I knew that some bony fish had lungs, but I had the order backwards. Thanks!

Of course, this has interesting implications. Fish in the ocean don't generally have to worry about oxygen depletion--the huge surface area of the ocean facilitates oxygen dissolution, as does the presence of oxygen-producing micro-organisms. So if lungs are a primitive feature of bony fish, they'd have to have evolved in lacustrin/fluvial environments--ie, in environments which would have been subject to occasional oxygen depletion. Or they arose at a time when oceans became largely anoxic (not completely out of the question--the Ocean Anoxic Events of the Late Cretaceous demonstrate that it can happen--but it's certainly not a commonly accepted idea).
 

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