Reheat has more patience than I do. These guys have answered your questions, but the animation is just that, an animation used for reference. It was identified as such by the NTSB as a "working" animation and was never used for official purposes. Look at the one that NORAD commissioned for the same purpose, neither are exact (or meant to be) representations of the flight path.
After several years of seriously investigating the same subject, I decided that the animation is moot. Some want to argue that it is off because of mag dec (which should be around 10 degrees, but the actual difference is 20 degrees), or someone did put in the mag dec but the inverse of the correct value (but that don't explain why it is not off alignment in the beginning), or someone just placed the little Pentagon area image in rotated. It does not matter, since for whatever reason, most reasonable people agree it is not an accurate representation of the planes final heading visually.
As to the differences between the CSV and RO2 files, most of these are explained in the NTSB documents and I would suggest spending a few days with them and doing some homework understanding the terms used. We can go around in circles speculating why this and that, but we simply will not know until the NTSB releases additional information. My suggestion would be asking them the same questions since they are the only ones who can adequately answer them.