None of these categories are strictly limited to religion. Each can have secular abuses. I think the only real conclusion is not that religion itself is bad but that situations where a monolithic ideology is prevalent are likely to be abused in some fashion. So, when a free flow of ideas is present there is no reason to assume that religion would have an especially negative influence. I'll admit that I can't think of that many examples where this has happened though on a large scale. The call for Vatican II back in 1962 is one and the current Interfaith Alliance is another. Sadly there are so many more examples of the opposite of this such as the Association of Religious Broadcasters. I think it might be fairest to say that religion can be a positive force but it takes effort, openness, and cooperation.
None of those are limited to religion, but that's not an excuse for any other entity or ideology. We don't excuse KKK on account that OTHER organizations or ideologies behave just as badly, or would behave just as badly if they could. We don't excuse Ted Bundy on account that, really, there are plenty of other people (the Taliban for a start) who'd equally want to kill a young woman who went to a stranger's house to get laid. Etc. So I'm not sure why or how that would work in favour of religion.
Plus, honestly, all you just said in that numbered list boils down to yeah, religion would be bad, if it ever got secular authority, or authority over education, and so on. Given that religion is invariably struggling to get such authority -- often via a side-step, like lobbying Uganda to execute gays, if it can't do that at home in the USA -- that sounds to me like you just made the case for why it should be fought off, contained, and prevented from ever being in a position to get such power. You just made the anti-theist case, and quite eloquently so, really. I thank you for it.
Plus, again, the same can be said for any organization we don't really encourage. The KKK is also entirely benign, if you can prevent it from having any power, or from spreading its ideology to the young 'uns. The Taliban, same idea. Hell, even the
Neo Nazis are also benign, if you can prevent them from ever having the power to actually kill Jews and Blacks and whatnot, and from controlling some education outlet to indoctrinate children. Etc.
Yet for all those, we essentially decided that we don't like them anyway. Not many people would say, ah, the KKK is good and joining the KKK is harmless, because they're not in a position of power, nor control the education. The fact that if they ever got enough power, they'll be a problem, is reason enough to dislike them.