I have hand-drawn stereoscope slides--the calculations for retinal disparity are straightforward (can be done by eye, of course--Dali did some paintings that were stereoscopic!--but for films, calculating would be far better). For films like the Star Wars series, where so much is digital to begin with, it is theoretically simple, if mind-bogglingly huge, to assign distances to each digital object and adjust retinal disparity in accordance with that. For analog film, somebody is going to have to define different areas as nearer or further away in order to do the same thing. For extremely close objects it might be difficult, and new digital views for one eye may have to be constructed to match the original film for the other eye. (for an example of what I mean, hold your hand close to your face and point at your right eye with your finger. That would be the original shot of someone pointing at you. Now look at that finger with each eye alternately, and see the huge difference in image. The second image would have to be computer generated--or painted by had, I guess--, if the first was the only print we have of the original film.)
As for the flicker factor, I have used that sort of 3D goggle here at work. I think I get a hint of a flicker (it might be imagination) if I intentionally look up or down or left or right, so that the computer screen (the source of the video) is in my far periphery (more sensitive, but less accurate), but for normal viewing, I have not noticed a flicker from a computer monitor. I don't know what the frames-per-second are on the new movie technology (and your link won't open for my computer, which I think is my fault totally), but I have heard that the price of the new digital projectors is ... daunting.
That said...I have always loved 3D movies, from my first "creature from the black lagoon" experience with blue and red lenses, to "Jaws 3 in 3D" shown using polarized light on a special metal screen...I can't wait for an IMAX 3D showing of ...well, just about anything! 3D movies seem to make movie-makers really stupid; they will add anything that is an excuse to show off an explosion, or something thrown at the audience, or (a Vincent Price movie) a stupid yo-yo trick! I love it! But taking a movie that is already good....and adding this technology? Sign me up!