Good point, but are you saying that people have been searching for evidence that prayer works for 500 years? People have believed that prayer works nearly exclusively based on faith rather than evidence. According to Wikipedia, people have believed that intelligent life exists elsewhere in the galaxy (also based on faith) since before 546 B.C.
SETI's first experiment to provide evidence
for intelligent life elsewhere in the galaxy was around 1960. Francis Galton conducted an experiment to
disprove prayer in 1872. The earliest attempt I could find to provide evidence
for prayer was in 1988. Even if we accept Galton's experiment (even though it set out to provide evidence
against prayer rather than evidence
for prayer), then the first experiment concerning prayer was only 88 years before SETI's first experiments. If we want to compare attempts to provide evidence
for the two beliefs, SETI's may have come first.
That said, the fact that Galton's experiment
against prayer may have been done
before the first experiment
for prayer suggests that believers in prayer should be given more time to prove their case (as should, perhaps, belief that prayer doesn't work).
On the other hand, the only beliefs for or against prayer that can be tested (and therefore the only beliefs for which there is any actual evidence) are those that assume that prayer must work under controlled conditions. Other (probably more common) beliefs in prayer are unfalsifiable and therefore performing tests to prove or disprove them would be pseudoscience at best. This is the same criticism used against SETI. According to
Wikipedia:
It seems far more rational to me to admit that an unfalsifiable belief is based on faith than to believe that it is based on science. You can make the case that there isn't enough evidence to warrant either belief, but I don't think that either belief is irrational.
-Bri