A physicist answers your first 4 points:
Well done. And now an engineer answers them.
1. Same as the physics answer, because it's neither a physics nor an engineering question. It's just a red herring. Prior to Sept. 11, 2001 there were no previous examples of airliners of that size flying into high-rise buildings of that particular construction. There's nothing suspicious about that; it just hadn't happened before. And after Sept. 11, 2001, there have been no subsequent examples. The closest we got was the bomber flying into the Empire State Building by accident decades ago. The singularity of the occurrences on Sept. 11, 2001 is due to the circumstances simply not arising. The fact that it happened multiple times at that time and place was obviously because it was a planned operation that called for multiple suicide collisions. Duh. If, for example, you drop several bombs on a single building at one time, there will be a "suspicious" level of damage compared to other times and places.
If there is an engineering lesson to be learned for this question, it is the corollary that if you subject two identical structures to similar mechanical injury and subsequent similar thermal loading, you should expect similar outcomes. Voilà.
2. Logically, just bare
dicta. From the engineering standpoint, "a steel-framed building" is a straw man. Most steel-framed office buildings are made with pre-engineered steel framing. This is especially attractive since in many places you don't need a structural engineer if you use this method. But these "steel-framed buildings" have vastly different structural behavior characteristics from the World Trade Center, which used a novel structural design. The WTC design was far more structurally efficient and relied on far fewer redundancies and failure isolation methods. There is really no One True steel-framed building, so it's not especially helpful to try to compare them blindly.
How fast a structure fails and to what degree it fails depends on a number of factors that differ widely across construction methods. The comparison to controlled demolition is not entirely inapt. Before the application of explosives, the structural redundancies and inefficiencies are removed using ordinary methods. What remains is the structure barely required to maintain its own dead load. This is then failed with explosives. Inasmuch as the WTC was a highly efficient structural design (ratio of live load to dead load) it can be expected to fail in much the same way.
Buildings are mostly empty space. Falling into their own footprints is the norm for a high-efficiency structure. You get major ejections or tipping only when the building's strength-to-mass ratio is very high.
Claiming that controlled demolition is "the only way" to get a rapid, global, more-or-less vertical collapse is just blowing smoke.
3. Yes, the bottom floor of a structure must hold up all the other floors. And it is expected to do that unless the structure is compromised in some way. The structure of the World Trade Center was compromised in several ways.
A major part of why structures succeed is geometry. You can load a structural member axially to an absurd degree before it fails. Its willingness to accept that load is based on Euler's slenderness ratio, which is an inverse-square law function of the unbraced length of the member. Double the free span and you reduce its axial load-bearing capacity by a factor of 4. Similarly the axial loading must remain axial within a very narrow margin. The slightest eccentricity in the load vector will fail the member. Both of these failure modes occurred in the World Trade Center towers.
Before I endorse the answer that pits dynamic loading against static loading, let me note that you don't need dynamic loading to understand the problem.
There's a simple experiment done in classrooms all over the United States in various science classes. You have a student stand on an empty soda can. The can will easily bear her weight because its geometry keeps the thin aluminum walls braced sufficiently to satisfy Euler. But if you dent the side of the can by tapping it with a stick, the can fails immediately and completely; the student falls at "near free-fall speed" to the floor. The can represents a very highly efficient structure. The can is only about 0.02 kg but can easily support a 50 kg student. But once the geometry that achieves that efficiency is defeated, the static load is enough to fail the structure.
Conversely if you have a 65 mm x 120 mm cylinder of concrete (roughly the same dimensions as a soda can), it will easily hold up the student no matter how many times you try to dent it by tapping it with a stick. In fact you'd have to put a garbage truck on it.
But yes, dynamic loading. It's orders of magnitude greater than static loads. The 2nd floor of a building is meant to hold up the 3rd through 47th floors of a
standing structure. It can't even remotely absorb the impact of floors 4-47 if the 3rd floor suffers a major structural failure. And after the underlying floors are obliterated under the dynamic load of a falling building, the sudden impact of the falling upper floors on the ground and wreckage underneath isn't going to be suddenly borne by those lower floors.
4. Not at all a "basic engineering principle," but a simplistic conclusion drawn from lay intuition and dressed up with some sort of undeserved expert imprimatur.
Thermal loading is a major concern for structural design. Real engineers very much understand how reducing the strength of material or changing its geometry via thermal loading can fail a structure. A fire combined with massive structural damage from an airliner impact will easily fail a structure that has fewer redundancies than you expect from your experience with pre-engineered structure.
The WTC fires were not especially on "upper" floors. But it's irrelevant. If the structure's geometry is compromised by impact and its strength reduced by heat, what remains can't be expected forever to hold up the weight of several floors. It's meant to do that only with the structure relatively intact. "Basic engineering" requires looking at the mechanics of materials, indeterminate statics (structural statics that includes the elastic properties of the materials), and elementary structural analysis.
And yes, we've been listening to blowhards playing at being engineers for more than two decades. No new arguments here. Just a bunch of naked assertions with the bluff, "If you don't accept these, then you just don't have the proper foundation of engineering knowledge."